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Why Does My Toilet Smell Even After Cleaning It?

9 July

According to a national plumbing survey, nearly 3 in 5 Australians report experiencing persistent toilet odours even after thorough cleaning. You scrub the bowl, disinfect every surface, light a candle—and yet, that musty or sulphuric smell still creeps back in. It’s not just annoying; it’s baffling. How can a spotless toilet still smell like something’s gone wrong?

The truth is, a sparkling bowl doesn’t always mean everything’s right beneath the surface. Smells can linger because of deeper plumbing issues that no amount of bleach can fix.

We will discuss the most common reasons your toilet still stinks after cleaning and, more importantly, how to get rid of that foul whiff finally.

Understanding the Common Misconception About Toilet Smells

It’s easy to assume that a quick bowl scrub is all it takes to eliminate toilet odours. Many people believe the toilet should smell clean if it looks clean. But in reality, the issue often runs much deeper.

Traps, drains, and internal seals manage waste and block gases. When something goes wrong in these areas, unpleasant smells can escape, regardless of how spotless the bowl appears.

Smell is usually a sign of an underlying plumbing issue, not just poor hygiene. Even the best cleaning products won’t fix what’s happening below the surface.

Top Reasons Your Toilet Smells Even After Cleaning

Even the cleanest-looking toilet can harbour hidden problems that give off unpleasant odours. If you’ve scrubbed, disinfected, and deodorised but the stench still lingers, the issue likely runs deeper than surface grime. Here are the most common culprits behind persistent toilet smells—none of them are fixed with a quick air freshener spray.

Trying To Remove Toilet Smells

1. Dry P-Trap

The P-trap is a curved pipe beneath your toilet or drain that holds a small amount of water. This water is a protective barrier, blocking sewer gases from entering your bathroom. When toilets aren’t used for extended periods, like in guest bathrooms, holiday homes, or rarely accessed en-suites, the water inside the P-trap can evaporate.

Once that seal is broken, foul-smelling gases enter your home. The fix can be as simple as running water through the system or refilling the trap, but it’s something most homeowners don’t think to check.

2. Blocked or Partially Blocked Sewer Line

Just because the bowl looks clean doesn’t mean everything flows as it should behind the scenes. Waste build-up, toilet paper clogs, or foreign objects lodged in the sewer line can create a nasty backlog. This leads to slow draining, odd gurgling noises, and yes, ongoing bad smells.

If left untreated, it can result in a full-blown toilet backup. Since blockages often occur deep within the pipes, resolving this requires professional tools and experience to avoid further damage.

3. Cracked Toilet Base or Seal

Underneath every toilet is a wax ring or rubber seal that forms a tight connection between the toilet’s base and the drainpipe below. This prevents water and sewer gases from escaping.

If this seal becomes loose, misaligned, or cracked from age or incorrect installation, you might notice a persistent smell even if nothing is visibly leaking. These tiny fractures are often invisible but allow gas to seep through steadily, creating an odour that no scrubbing will fix.

4. Bacterial Growth Under the Rim or Inside the Tank

Toilet bowls can look sparkling on the surface but still harbour grime in places rarely cleaned. Bacteria thrive under the rim and inside the tank, feeding on residue and producing a musty, sour odour. Standard cleaning often misses these hidden spots.

Using a specialised rim brush and periodically cleaning the inside of the tank with vinegar or a gentle disinfectant can eliminate this hidden source of bad smells.

5. Ventilation Issues

Every modern plumbing system is designed with vent pipes that allow sewer gases to escape safely through the roof. If these vents become blocked by debris, bird nests, or accumulated grime, gases can’t flow out—they get pushed back into your home instead.

This often results in intermittent toilet smells, particularly after flushing. Older homes are especially prone to this issue, and it’s one of the most overlooked causes of bathroom odours.

DIY Troubleshooting Tips Before Calling a Plumber

Before picking up the phone, there are a few simple checks and cleaning tricks you can try yourself. These quick fixes can often solve the problem without too much effort.

Cleaning Toilet Smell

1. Rehydrate the P-trap

  • Pour a bucket of water into the toilet bowl and the nearby floor drains
  • This helps refill the trap and block sewer smells from rising

2. Deep Clean Inside the Tank

    • Mix vinegar and baking soda, then scrub the inside of the tank

3. Inspect for Cracks

  • Look around the toilet base for small leaks or stained flooring
  • A cracked seal can let odours escape even without visible water

4. Use an Enzyme Cleaner

  • Apply an enzyme-based cleaner around the bowl and in the tank
  • These cleaners break down waste build-up that may cause smells

5. Sniff Test for Ventilation

  • Pay attention after flushing, if the smell gets stronger, a vent may be blocked.d
  • Strange gurgling sounds are another sign of poor airflow

These steps can help pinpoint the source of the problem and save time before calling in a professional.

When the Problem Goes Deeper: Plumbing Issues That Cause Toilet Odours

If the smell keeps returning despite your best cleaning efforts, it’s often a red flag for something more serious. Lingering toilet odours can point to underlying plumbing issues beyond surface cleaning.

Some of the deeper causes include:

  • Damaged sewer lines: Cracks or corrosion in the pipes can allow gases to escape
  • Collapsed pipes: Old or poorly installed plumbing can cave in and disrupt waste flow
  • Tree root intrusion: Roots from nearby trees can force their way into pipes, blocking flow and releasing bad smells

These problems often go unnoticed because they happen underground or behind walls. They’re nearly impossible to detect without specialised equipment like CCTV drain cameras.

Preventive Measures to Keep Your Toilet Smelling Fresh

A few simple habits can help keep your bathroom smelling clean and prevent issues before they start. Regular attention makes all the difference.

Clean Toilet Still Smells

1. Flush Unused Toilets Regularly

Flushing toilets that don’t get much use keep the P-trap filled with water. This water barrier is essential for preventing sewer gases from entering your bathroom. Toilets in guest rooms or spare bathrooms should be flushed at least once a week.

2. Use Non-Corrosive Cleaners

Too-harsh cleaning products can break down rubber seals and internal fittings. Over time, this damage can create small leaks or let odours escape. Gentle, non-corrosive cleaners do the job without wearing out essential parts.

3. Improve Bathroom Ventilation

A well-ventilated bathroom helps clear out damp air and prevents the growth of mould or bacteria. Installing a vent fan or opening a window regularly improves airflow and helps keep the space smelling fresh.

4. Schedule an Annual Plumbing Check

A yearly inspection from a licensed plumber is a smart way to keep on top of things. They can check seals, drains, and vent pipes to spot any early signs of trouble before they turn into bigger problems.

5. Use Tank Tablets Wisely

Drop-in cleaning tablets can help keep the toilet fresh between deep cleans. However, avoid relying on them as your primary method of cleaning. They’re helpful for light maintenance, but nothing beats a proper scrub.

Myths About Toilet Odours That Might Be Misleading You

When a toilet smells off despite regular cleaning, it’s easy to fall for quick fixes and common myths. Unfortunately, these often do more harm than good and can delay the real solution.

One of the most common misconceptions is, “If the bowl is clean, there’s no smell source.” A spotless bowl might look fine, but it says nothing about what’s happening inside the tank, under the rim, or deeper in the pipes. Odours often come from hidden places that regular cleaning doesn’t touch.

Another widespread belief is, “Bleach fixes everything.” While bleach can kill surface bacteria, it doesn’t always reach the root of the problem. It can also damage rubber seals and parts inside the tank, making things worse over time.

And then there’s the classic, “Toilet air fresheners are enough.” While these may temporarily mask the smell, they don’t fix anything. Relying on them too often can cover up the signs of a more serious issue, like a damaged seal or blocked vent pipe.

The truth is, solving odour problems takes more than surface-level effort. Trusting these myths can mean ignoring signs that something more profound in your plumbing system needs attention.

Let a Local Expert Take the Lead – We’re Just Around the Corner

It’s easy to ignore that foul smell for a while, until guests arrive or the odour becomes overwhelming. If you’ve tried cleaning and the smell keeps returning, it’s time to stop guessing. Blocked toilets and damaged seals are no DIY job, and that’s where expert help comes in.

The solution starts with knowing what to look for and calling in the right help. At Gold Coast Plumbing Company, we’re experts in detecting and resolving the real cause of stubborn toilet smells.

Contact us today for reliable, fast and friendly blocked toilet services. Let’s get your bathroom back to smelling fresh again.